Project name: 3cb51e2152e44cb

Status: done

submitted: 2018-07-05 09:10:51, status changed: 2018-07-20 11:39:02

Project settings
Peptide sequence YPFVEPI
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 16.0025 5.87407 19.8722 94
cluster_2.pdb ( medoid) 15.7072 5.47518 26.4605 86
cluster_3.pdb ( medoid) 14.5707 6.79444 27.0091 99
cluster_4.pdb ( medoid) 12.2314 4.82367 13.9067 59
cluster_5.pdb ( medoid) 11.3428 15.1638 39.189 172
cluster_6.pdb ( medoid) 10.7147 13.0662 41.8044 140
cluster_7.pdb ( medoid) 9.50237 7.15611 16.0961 68
cluster_8.pdb ( medoid) 9.22513 12.0324 29.6998 111
cluster_9.pdb ( medoid) 9.09937 10.77 29.3725 98
cluster_10.pdb ( medoid) 7.91394 9.22423 29.1306 73

Laboratory of Theory of Biopolymers 2015