Project name: CD69 PDPNpep

Status: done

submitted: 2017-09-12 12:53:57, status changed: 2017-09-12 17:42:57

Project settings
Peptide sequence NVATSHST
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 52.1956 3.90837 25.3303 204
cluster_2.pdb ( medoid) 28.012 7.74669 23.3578 217
cluster_3.pdb ( medoid) 17.0151 5.58327 29.3584 95
cluster_4.pdb ( medoid) 13.6044 2.86673 5.36818 39
cluster_5.pdb ( medoid) 13.1312 5.40696 13.8606 71
cluster_6.pdb ( medoid) 10.3296 10.3586 36.4299 107
cluster_7.pdb ( medoid) 7.28397 14.1406 40.4499 103
cluster_8.pdb ( medoid) 6.06479 11.7069 33.3758 71
cluster_9.pdb ( medoid) 4.58519 6.32471 26.4823 29
cluster_10.pdb ( medoid) 3.85848 16.5868 37.453 64

Laboratory of Theory of Biopolymers 2015