Project name: 2otu bound default EF QQQQQQQQQQG ss: CCCCCCCCCEC

Status: done

submitted: 2015-02-19 18:28:30, status changed: 2015-03-13 10:57:07

Project settings
Peptide sequence QQQQQQQQQQG
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_4 Download
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model_6 Download
model_7 Download
model_8 Download
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model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 16.1002 7.88811 39.9291 127
cluster_2.pdb ( medoid) 15.6155 6.78814 18.7114 106
cluster_3.pdb ( medoid) 14.9047 7.71568 37.8814 115
cluster_4.pdb ( medoid) 12.9408 7.72752 22.1751 100
cluster_5.pdb ( medoid) 12.1556 8.47346 19.7422 103
cluster_6.pdb ( medoid) 8.09771 15.8069 37.3509 128
cluster_7.pdb ( medoid) 8.09155 11.3699 23.9304 92
cluster_8.pdb ( medoid) 7.95251 5.78433 15.3224 46
cluster_9.pdb ( medoid) 6.6964 13.5894 42.8118 91
cluster_10.pdb ( medoid) 5.7905 15.8881 40.3471 92
Laboratory of Theory of Biopolymers 2015