Project name: 5lwm4

Status: done

submitted: 2023-06-02 07:35:07, status changed: 2023-06-02 14:24:05

Project settings
Peptide sequence ISDAYRLKY
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 28.4691 5.7255 38.7248 163
cluster_2.pdb ( medoid) 20.627 5.42979 30.195 112
cluster_3.pdb ( medoid) 16.5759 10.0748 29.8765 167
cluster_4.pdb ( medoid) 14.4039 9.99728 23.2277 144
cluster_5.pdb ( medoid) 13.6005 7.27915 28.4666 99
cluster_6.pdb ( medoid) 10.8315 7.93983 19.2323 86
cluster_7.pdb ( medoid) 10.7195 5.87712 14.7664 63
cluster_8.pdb ( medoid) 6.60555 12.4138 33.2561 82
cluster_9.pdb ( medoid) 6.56124 6.85845 17.4439 45
cluster_10.pdb ( medoid) 2.61187 14.9319 30.8263 39