Project name: 2zjd bound default A GGDDDWTHLS ss: CCCCCCEECC

Status: done

submitted: 2015-02-19 18:28:32, status changed: 2015-03-13 10:57:26

Project settings
Peptide sequence GGDDDWTHLS
Simulation mc cycles50
Peptide secondary structure CCCCCCEECC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 55.2577 4.56045 27.8687 252
cluster_2.pdb ( medoid) 35.5993 6.37653 22.201 227
cluster_3.pdb ( medoid) 21.9989 5.50026 13.9815 121
cluster_4.pdb ( medoid) 14.4589 4.49551 9.25862 65
cluster_5.pdb ( medoid) 10.9007 5.04554 9.73528 55
cluster_6.pdb ( medoid) 8.89189 11.8085 31.343 105
cluster_7.pdb ( medoid) 8.63821 7.06165 14.2898 61
cluster_8.pdb ( medoid) 6.01627 6.64863 13.9736 40
cluster_9.pdb ( medoid) 4.5142 7.08874 16.2259 32
cluster_10.pdb ( medoid) 4.48996 9.3542 24.3156 42
Laboratory of Theory of Biopolymers 2015