Project name: 2ho2 bound default 2 runA PPPPPPPPPL ss: CCCCCCCCCC

Status: done

submitted: 2015-02-23 11:18:40, status changed: 2015-03-13 10:57:30

Project settings
Peptide sequence PPPPPPPPPL
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 51.7882 2.06611 16.3395 107
cluster_2.pdb ( medoid) 23.3788 2.30978 8.96484 54
cluster_3.pdb ( medoid) 22.9266 8.59264 22.4608 197
cluster_4.pdb ( medoid) 20.6456 7.07174 15.2423 146
cluster_5.pdb ( medoid) 14.3201 8.51949 18.0638 122
cluster_6.pdb ( medoid) 14.0072 5.49717 14.2189 77
cluster_7.pdb ( medoid) 13.9895 5.21822 13.4802 73
cluster_8.pdb ( medoid) 10.2412 5.76106 18.6246 59
cluster_9.pdb ( medoid) 9.7847 9.60684 19.5547 94
cluster_10.pdb ( medoid) 6.70671 10.5864 18.5311 71
Laboratory of Theory of Biopolymers 2015