Project name: 2O9S unbound default A VPPPVPPPPS ss: CCCCCCCCCC

Status: done

submitted: 2015-02-20 17:44:49, status changed: 2015-03-13 10:57:51

Project settings
Protein sequence(s) GIDPFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKRPL input pdb
Peptide sequence VPPPVPPPPS
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
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model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
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replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 46.4963 4.90362 18.896 228
cluster_2.pdb ( medoid) 39.3156 3.38288 10.4434 133
cluster_3.pdb ( medoid) 36.8954 3.7132 9.81786 137
cluster_4.pdb ( medoid) 23.8768 4.69074 14.7177 112
cluster_5.pdb ( medoid) 13.6318 6.38213 14.945 87
cluster_6.pdb ( medoid) 9.48954 7.27116 23.7779 69
cluster_7.pdb ( medoid) 8.91463 9.42272 23.2276 84
cluster_8.pdb ( medoid) 6.92228 10.1123 25.8598 70
cluster_9.pdb ( medoid) 5.23625 8.59393 17.0328 45
cluster_10.pdb ( medoid) 4.04239 8.65825 16.3465 35
Laboratory of Theory of Biopolymers 2015