Project name: 5lwm3

Status: done

submitted: 2023-06-02 07:32:34, status changed: 2023-06-02 14:16:28

Project settings
Peptide sequence VISDAYRLK
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 37.9183 2.3999 24.584 91
cluster_2.pdb ( medoid) 29.9169 3.24232 14.1298 97
cluster_3.pdb ( medoid) 28.8918 5.50329 20.319 159
cluster_4.pdb ( medoid) 27.1876 4.377 10.8944 119
cluster_5.pdb ( medoid) 24.254 6.10208 33.1166 148
cluster_6.pdb ( medoid) 10.6467 12.3042 34.397 131
cluster_7.pdb ( medoid) 9.46719 13.7316 45.0985 130
cluster_8.pdb ( medoid) 4.71407 10.8187 21.1481 51
cluster_9.pdb ( medoid) 2.55852 14.4615 38.2402 37
cluster_10.pdb ( medoid) 2.15879 17.1392 37.8014 37