Project name: 495920d9c049412

Status: done

submitted: 2018-10-12 03:20:10, status changed: 2018-10-12 09:52:15

Project settings
Peptide sequence CYGGRLRVRRGRCPR
Simulation mc cycles50
Peptide secondary structure psipred CCCCEEEEEECCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 33.7403 3.37874 20.8218 114
cluster_2.pdb ( medoid) 19.297 6.52951 34.1398 126
cluster_3.pdb ( medoid) 18.6977 5.40173 25.7986 101
cluster_4.pdb ( medoid) 15.1327 9.18541 34.3647 139
cluster_5.pdb ( medoid) 14.7534 9.48935 34.2235 140
cluster_6.pdb ( medoid) 9.85351 12.6858 31.6577 125
cluster_7.pdb ( medoid) 8.29355 12.9016 35.5529 107
cluster_8.pdb ( medoid) 5.86589 10.9105 32.9097 64
cluster_9.pdb ( medoid) 3.61961 13.2611 36.9414 48
cluster_10.pdb ( medoid) 3.57889 10.059 19.8784 36

Laboratory of Theory of Biopolymers 2015