Project name: 2r7g bound default 2 runC PPTLHELYDL ss: CCCHHHHCCC

Status: done

submitted: 2015-02-23 11:18:44, status changed: 2015-03-13 10:59:35

Project settings
Peptide sequence PPTLHELYDL
Simulation mc cycles50
Peptide secondary structure CCCHHHHCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_4 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 49.5248 2.86725 7.55547 142
cluster_2.pdb ( medoid) 46.0964 3.34083 9.45567 154
cluster_3.pdb ( medoid) 36.9137 2.70902 5.60409 100
cluster_4.pdb ( medoid) 28.9638 4.21216 18.4968 122
cluster_5.pdb ( medoid) 20.2689 5.72305 13.1007 116
cluster_6.pdb ( medoid) 18.6029 4.46166 9.61667 83
cluster_7.pdb ( medoid) 18.4737 5.57548 11.7206 103
cluster_8.pdb ( medoid) 13.7424 4.80264 25.1335 66
cluster_9.pdb ( medoid) 9.64782 4.87156 10.6473 47
cluster_10.pdb ( medoid) 8.67886 7.71991 16.2993 67
Laboratory of Theory of Biopolymers 2015