Project name: 2j6f bound default A PPKPRPRR ss: CCCCCCCC

Status: done

submitted: 2015-02-19 18:28:29, status changed: 2015-03-13 10:59:46

Project settings
Protein sequence(s) VDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIK input pdb
Peptide sequence PPKPRPRR
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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model_7 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 51.6208 2.6346 10.49 136
cluster_2.pdb ( medoid) 42.6532 3.61051 14.3001 154
cluster_3.pdb ( medoid) 39.2544 3.4391 9.4046 135
cluster_4.pdb ( medoid) 37.8735 4.14538 8.97296 157
cluster_5.pdb ( medoid) 15.827 4.80191 11.9632 76
cluster_6.pdb ( medoid) 15.7075 8.78562 29.6346 138
cluster_7.pdb ( medoid) 14.5365 5.43461 12.9642 79
cluster_8.pdb ( medoid) 6.14781 13.3381 30.8003 82
cluster_9.pdb ( medoid) 3.4108 5.57054 13.4452 19
cluster_10.pdb ( medoid) 1.54024 15.582 29.0826 24
Laboratory of Theory of Biopolymers 2015