Project name: Docking project

Status: done

submitted: 2018-01-03 21:48:48, status changed: 2018-01-04 06:28:59

Project settings
Peptide sequence SFGDGFADF
Simulation mc cycles50
Peptide secondary structure CCCCHHHHC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 53.6805 1.91876 21.3228 103
cluster_2.pdb ( medoid) 20.3182 9.30199 38.7614 189
cluster_3.pdb ( medoid) 19.2753 4.30603 9.97245 83
cluster_4.pdb ( medoid) 13.5154 5.6972 25.3732 77
cluster_5.pdb ( medoid) 13.2547 7.16728 36.8224 95
cluster_6.pdb ( medoid) 10.1863 11.1916 36.4949 114
cluster_7.pdb ( medoid) 7.79187 12.9622 34.4124 101
cluster_8.pdb ( medoid) 7.67411 9.64281 33.5473 74
cluster_9.pdb ( medoid) 7.28381 8.10016 27.3288 59
cluster_10.pdb ( medoid) 4.26511 15.0055 42.0083 64

Laboratory of Theory of Biopolymers 2015