Project name: 9A_pep9B

Status: done

submitted: 2018-01-13 21:47:42, status changed: 2018-01-14 01:08:35

Project settings
Peptide sequence PTTTKPTTTKPTTTK
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCCCCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 33.1294 3.56179 19.6107 118
cluster_2.pdb ( medoid) 24.5566 4.35728 18.5498 107
cluster_3.pdb ( medoid) 15.5093 8.51104 28.9139 132
cluster_4.pdb ( medoid) 15.2391 7.94011 29.9229 121
cluster_5.pdb ( medoid) 14.0498 10.7475 25.8232 151
cluster_6.pdb ( medoid) 13.7229 10.8578 28.6223 149
cluster_7.pdb ( medoid) 8.48533 8.83879 18.4713 75
cluster_8.pdb ( medoid) 5.54995 6.48654 21.4601 36
cluster_9.pdb ( medoid) 5.19252 8.08855 20.865 42
cluster_10.pdb ( medoid) 4.58773 15.0401 28.0866 69

Laboratory of Theory of Biopolymers 2015