Project name: 2p0w bound default A KGGKGLGKGGAKRHR ss: CCCCCCCCCCCCCCC

Status: done

submitted: 2015-02-19 18:28:30, status changed: 2015-03-13 11:00:15

Project settings
Peptide sequence KGGKGLGKGGAKRHR
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
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model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 34.2071 3.88808 20.7222 133
cluster_2.pdb ( medoid) 31.3132 3.64063 23.8651 114
cluster_3.pdb ( medoid) 19.3865 9.28481 28.8819 180
cluster_4.pdb ( medoid) 11.1926 11.4361 52.3039 128
cluster_5.pdb ( medoid) 8.1117 11.2184 33.5264 91
cluster_6.pdb ( medoid) 7.86008 10.5597 30.0674 83
cluster_7.pdb ( medoid) 7.16619 8.65174 33.6338 62
cluster_8.pdb ( medoid) 6.45643 10.687 33.5389 69
cluster_9.pdb ( medoid) 5.33721 11.4292 27.383 61
cluster_10.pdb ( medoid) 1.61121 21.1021 44.3566 34
Laboratory of Theory of Biopolymers 2015