Project name: 5lwm1

Status: done

submitted: 2023-06-02 07:11:53, status changed: 2023-06-02 13:50:41

Project settings
Peptide sequence MGVISDAYR
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 36.5293 3.58616 15.2851 131
cluster_2.pdb ( medoid) 28.8959 2.87238 28.5462 83
cluster_3.pdb ( medoid) 22.4398 2.00537 11.3344 45
cluster_4.pdb ( medoid) 17.0852 9.01363 46.3876 154
cluster_5.pdb ( medoid) 16.7677 7.4548 27.3572 125
cluster_6.pdb ( medoid) 14.6599 8.73129 30.679 128
cluster_7.pdb ( medoid) 10.784 12.2403 33.071 132
cluster_8.pdb ( medoid) 9.57603 8.98076 27.8772 86
cluster_9.pdb ( medoid) 3.37305 18.0845 39.1291 61
cluster_10.pdb ( medoid) 2.57397 21.3678 41.8646 55