Project name: 1jd5 bound default 3 runA AIAYFIPD ss: CEEEECCC

Status: done

submitted: 2015-02-23 11:19:00, status changed: 2015-03-13 11:00:26

Project settings
Peptide sequence AIAYFIPD
Simulation mc cycles50
Peptide secondary structure CEEEECCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 36.0721 4.74051 26.7994 171
cluster_2.pdb ( medoid) 34.7941 6.0355 18.151 210
cluster_3.pdb ( medoid) 21.3247 7.36236 20.0431 157
cluster_4.pdb ( medoid) 13.4843 5.1912 13.8536 70
cluster_5.pdb ( medoid) 11.4162 5.25569 12.4432 60
cluster_6.pdb ( medoid) 10.3918 10.3929 31.6622 108
cluster_7.pdb ( medoid) 8.42905 9.13507 23.6461 77
cluster_8.pdb ( medoid) 7.91124 7.71055 21.4178 61
cluster_9.pdb ( medoid) 6.36009 9.2766 24.9662 59
cluster_10.pdb ( medoid) 2.64079 10.2242 19.9822 27
Laboratory of Theory of Biopolymers 2015