Project name: 2dze bound default 3 runAB LARRLR ss: CEEEEC

Status: done

submitted: 2015-02-23 11:19:13, status changed: 2015-03-13 11:01:01

Project settings
Peptide sequence LARRLR
Simulation mc cycles50
Peptide secondary structure CEEEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 81.7598 1.2231 2.5736 100
cluster_2.pdb ( medoid) 37.7556 2.96645 22.8271 112
cluster_3.pdb ( medoid) 30.3299 3.69273 19.8971 112
cluster_4.pdb ( medoid) 24.1886 4.09283 19.7992 99
cluster_5.pdb ( medoid) 14.8534 9.35812 21.7025 139
cluster_6.pdb ( medoid) 13.215 11.3507 42.7375 150
cluster_7.pdb ( medoid) 10.3912 6.73648 20.0051 70
cluster_8.pdb ( medoid) 9.88976 9.80812 20.5404 97
cluster_9.pdb ( medoid) 6.27578 12.5881 32.1368 79
cluster_10.pdb ( medoid) 2.89455 14.5101 35.1233 42
Laboratory of Theory of Biopolymers 2015