Project name: 1n12 bound default 3 runC SDVAFRGNLLD ss: CEEEEEEEEEC

Status: done

submitted: 2015-02-23 11:19:02, status changed: 2015-03-13 11:01:43

Project settings
Peptide sequence SDVAFRGNLLD
Simulation mc cycles50
Peptide secondary structure CEEEEEEEEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 21.708 6.0807 25.7863 132
cluster_2.pdb ( medoid) 19.2916 6.8942 28.6654 133
cluster_3.pdb ( medoid) 18.0394 8.53689 25.0648 154
cluster_4.pdb ( medoid) 16.3602 8.06836 23.7003 132
cluster_5.pdb ( medoid) 11.7245 8.35854 23.1117 98
cluster_6.pdb ( medoid) 11.0705 7.58774 24.6816 84
cluster_7.pdb ( medoid) 9.1061 11.8602 29.298 108
cluster_8.pdb ( medoid) 7.59483 9.34847 24.2471 71
cluster_9.pdb ( medoid) 7.13906 5.46291 15.3719 39
cluster_10.pdb ( medoid) 3.95512 12.389 28.1923 49
Laboratory of Theory of Biopolymers 2015