Project name: C-C dock

Status: done

submitted: 2017-12-07 15:43:14, status changed: 2017-12-07 16:28:43

Project settings
Peptide sequence NPPPNPLGT
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 22.4271 6.8667 22.2947 154
cluster_2.pdb ( medoid) 18.7396 3.52195 15.102 66
cluster_3.pdb ( medoid) 18.3822 7.94246 20.5211 146
cluster_4.pdb ( medoid) 16.9265 7.14857 18.8669 121
cluster_5.pdb ( medoid) 16.4235 5.72351 16.8341 94
cluster_6.pdb ( medoid) 11.4057 6.92639 17.1593 79
cluster_7.pdb ( medoid) 11.0046 6.36095 26.6142 70
cluster_8.pdb ( medoid) 9.63866 10.0636 26.7169 97
cluster_9.pdb ( medoid) 9.18817 10.2306 26.7467 94
cluster_10.pdb ( medoid) 6.90466 11.4416 25.5327 79

Laboratory of Theory of Biopolymers 2015