Project name: 1mvu bound default 3 runAB VVQEALDKAREGR ss: CHHHHHHHHHHCC

Status: done

submitted: 2015-02-23 11:19:02, status changed: 2015-03-13 11:01:57

Project settings
Peptide sequence VVQEALDKAREGR
Simulation mc cycles50
Peptide secondary structure CHHHHHHHHHHCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 39.1766 2.93543 20.9808 115
cluster_2.pdb ( medoid) 18.9427 5.7542 36.8909 109
cluster_3.pdb ( medoid) 15.6148 7.30075 39.1278 114
cluster_4.pdb ( medoid) 15.445 6.08612 18.5656 94
cluster_5.pdb ( medoid) 12.8321 10.1309 31.2407 130
cluster_6.pdb ( medoid) 11.9752 11.1063 25.5027 133
cluster_7.pdb ( medoid) 11.9673 10.6122 30.4918 127
cluster_8.pdb ( medoid) 6.31734 12.347 45.2925 78
cluster_9.pdb ( medoid) 3.64724 14.8057 31.6776 54
cluster_10.pdb ( medoid) 3.04225 15.1204 44.1804 46
Laboratory of Theory of Biopolymers 2015