Project name: 3d9t bound default 3 runB ATPFQE ss: CEEECC

Status: done

submitted: 2015-02-23 11:19:21, status changed: 2015-03-13 11:01:59

Project settings
Peptide sequence ATPFQE
Simulation mc cycles50
Peptide secondary structure CEEECC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 45.8229 4.01546 19.3596 184
cluster_2.pdb ( medoid) 36.4855 7.0439 29.9463 257
cluster_3.pdb ( medoid) 30.043 5.15928 13.04 155
cluster_4.pdb ( medoid) 21.9355 6.01765 21.0696 132
cluster_5.pdb ( medoid) 19.2992 4.45615 11.1712 86
cluster_6.pdb ( medoid) 10.1915 5.00415 9.18627 51
cluster_7.pdb ( medoid) 9.33866 5.247 11.1062 49
cluster_8.pdb ( medoid) 5.98228 6.85357 13.8295 41
cluster_9.pdb ( medoid) 2.30429 12.1512 21.548 28
cluster_10.pdb ( medoid) 1.79183 9.48752 18.8374 17
Laboratory of Theory of Biopolymers 2015