Project name: 1N7E unbound default A ATVRTYSC ss: CCCCCCCC

Status: done

submitted: 2015-02-20 17:44:36, status changed: 2015-03-13 11:02:02

Project settings
Protein sequence(s) GAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPASS input pdb
Peptide sequence ATVRTYSC
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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model_7 Download
model_8 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 69.697 2.59696 7.5752 181
cluster_2.pdb ( medoid) 39.3864 4.84939 13.7339 191
cluster_3.pdb ( medoid) 33.1855 2.32029 4.63022 77
cluster_4.pdb ( medoid) 30.3848 4.24555 13.397 129
cluster_5.pdb ( medoid) 27.1733 5.44653 20.716 148
cluster_6.pdb ( medoid) 15.5019 5.16066 15.9738 80
cluster_7.pdb ( medoid) 11.7793 6.1124 15.6141 72
cluster_8.pdb ( medoid) 8.30737 4.69463 9.63813 39
cluster_9.pdb ( medoid) 3.60121 12.7735 28.7626 46
cluster_10.pdb ( medoid) 2.58736 14.3003 30.0988 37
Laboratory of Theory of Biopolymers 2015