Project name: 1D1Z unbound default 2 run C KSLTIYAQVQK ss: CCCCCCCCCCC

Status: done

submitted: 2015-02-25 18:46:45, status changed: 2015-03-13 11:02:10

Project settings
Protein sequence(s) VAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEK input pdb
Peptide sequence KSLTIYAQVQK
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
model_8 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
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replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 43.3833 7.74492 24.7641 336
cluster_2.pdb ( medoid) 25.7408 6.02156 20.0856 155
cluster_3.pdb ( medoid) 24.3879 1.55815 6.43212 38
cluster_4.pdb ( medoid) 19.6876 2.18412 24.9455 43
cluster_5.pdb ( medoid) 13.0638 5.28176 19.8126 69
cluster_6.pdb ( medoid) 10.2076 8.22917 28.1439 84
cluster_7.pdb ( medoid) 10.0123 6.492 19.993 65
cluster_8.pdb ( medoid) 6.11723 16.3473 37.6284 100
cluster_9.pdb ( medoid) 4.92131 14.8335 33.0906 73
cluster_10.pdb ( medoid) 3.04738 12.1416 29.8208 37
Laboratory of Theory of Biopolymers 2015