Project name: 5bd25c0af6438eb

Status: done

submitted: 2018-01-12 04:44:39, status changed: 2018-01-12 07:01:25

Project settings
Peptide sequence SFTVPP
Simulation mc cycles50
Peptide secondary structure psipred CCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 43.0205 5.23006 22.6868 225
cluster_2.pdb ( medoid) 23.2056 6.16232 24.4483 143
cluster_3.pdb ( medoid) 22.5001 3.95554 10.8099 89
cluster_4.pdb ( medoid) 21.1282 3.4551 13.8862 73
cluster_5.pdb ( medoid) 20.9272 6.02087 25.0492 126
cluster_6.pdb ( medoid) 14.1448 6.50415 14.3533 92
cluster_7.pdb ( medoid) 12.4594 6.66164 14.9078 83
cluster_8.pdb ( medoid) 10.5269 5.22471 14.8692 55
cluster_9.pdb ( medoid) 9.68516 10.1186 35.7854 98
cluster_10.pdb ( medoid) 1.63271 9.79966 18.4895 16

Laboratory of Theory of Biopolymers 2015