Project name: FrankGGA5C7

Status: done

submitted: 2017-09-13 19:32:33, status changed: 2017-09-14 03:30:22

Project settings
Peptide sequence QDVSDRQGGTFWEIY
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCCEEEEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 33.4249 3.67989 17.4321 123
cluster_2.pdb ( medoid) 20.6437 8.13807 23.1366 168
cluster_3.pdb ( medoid) 17.7279 5.64082 22.5164 100
cluster_4.pdb ( medoid) 14.1884 8.95095 38.2873 127
cluster_5.pdb ( medoid) 8.85069 11.4115 35.5333 101
cluster_6.pdb ( medoid) 8.66507 9.6941 25.2375 84
cluster_7.pdb ( medoid) 8.47837 9.19988 43.6805 78
cluster_8.pdb ( medoid) 8.14662 14.8528 34.6279 121
cluster_9.pdb ( medoid) 4.38424 12.5449 29.9616 55
cluster_10.pdb ( medoid) 3.93769 10.9201 29.9631 43

Laboratory of Theory of Biopolymers 2015