Project name: 5ed1cf064f0365e

Status: done

submitted: 2018-01-03 08:43:49, status changed: 2018-01-03 10:24:32

Project settings
Protein sequence(s) ETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVV input pdb
Peptide sequence LTDQEKGREMYQILVITEDIEKEIENALG
Simulation mc cycles50
Peptide secondary structure psipred CCHHHHHHHHHHHHHHHHHHHHHHHHHHC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 42.1418 3.29838 9.55172 139
cluster_2.pdb ( medoid) 24.5477 6.39571 28.0873 157
cluster_3.pdb ( medoid) 18.9117 5.55211 17.5195 105
cluster_4.pdb ( medoid) 17.8094 4.09896 10.9758 73
cluster_5.pdb ( medoid) 14.1205 4.10749 13.4424 58
cluster_6.pdb ( medoid) 13.7653 6.97408 17.1932 96
cluster_7.pdb ( medoid) 13.6074 7.64292 19.014 104
cluster_8.pdb ( medoid) 11.0227 8.61856 17.9255 95
cluster_9.pdb ( medoid) 10.5127 7.89518 17.9268 83
cluster_10.pdb ( medoid) 8.80661 10.2196 19.6044 90

 
Laboratory of Theory of Biopolymers 2015