Project name: m15_9aaPRP_blind

Status: done

submitted: 2017-09-12 15:36:20, status changed: 2017-09-12 17:05:59

Project settings
Peptide sequence DFFDYMVRS
Simulation mc cycles50
Peptide secondary structure psipred CHHHHHHHC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 55.2982 2.51365 13.3587 139
cluster_2.pdb ( medoid) 43.9926 3.34147 9.55597 147
cluster_3.pdb ( medoid) 33.5369 4.62178 10.7995 155
cluster_4.pdb ( medoid) 31.2944 2.74809 8.11585 86
cluster_5.pdb ( medoid) 24.6484 4.66561 9.01816 115
cluster_6.pdb ( medoid) 24.0813 4.77549 11.5748 115
cluster_7.pdb ( medoid) 14.073 3.4108 7.95536 48
cluster_8.pdb ( medoid) 13.6853 6.13799 14.6761 84
cluster_9.pdb ( medoid) 7.70274 8.17891 15.8468 63
cluster_10.pdb ( medoid) 4.35105 11.0318 28.705 48

Laboratory of Theory of Biopolymers 2015