CABS-dock: 5lwm5

Project name: 5lwm5

Status: done

submitted: 2023-06-02 07:37:52, status changed: 2023-06-02 14:23:03

Project settings

Protein sequence(s)	PTIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRALAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGSERDVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWS input pdb
Peptide sequence	DAYRLKYTF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.2206	3.93085	31.6155	107
cluster_2.pdb ( medoid)	25.5755	3.67539	14.6061	94
cluster_3.pdb ( medoid)	23.4432	4.47891	24.7636	105
cluster_4.pdb ( medoid)	17.9471	9.30513	33.067	167
cluster_5.pdb ( medoid)	13.6347	6.67414	28.3563	91
cluster_6.pdb ( medoid)	12.3436	8.10133	24.1273	100
cluster_7.pdb ( medoid)	11.5623	6.22711	21.8253	72
cluster_8.pdb ( medoid)	11.009	8.17514	18.1302	90
cluster_9.pdb ( medoid)	10.4615	10.2279	34.9136	107
cluster_10.pdb ( medoid)	6.39825	10.4716	22.904	67