Project name: 1nln bound default 2 runA GVQSLKRRRCF ss: CCCEEEEEEEC

Status: done

submitted: 2015-02-23 11:18:28, status changed: 2015-03-13 11:03:02

Project settings
Peptide sequence GVQSLKRRRCF
Simulation mc cycles50
Peptide secondary structure CCCEEEEEEEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 31.1927 2.78911 10.9351 87
cluster_2.pdb ( medoid) 19.7676 5.41289 26.0184 107
cluster_3.pdb ( medoid) 18.8322 5.41624 26.3273 102
cluster_4.pdb ( medoid) 16.532 9.98063 28.8131 165
cluster_5.pdb ( medoid) 13.2562 6.56297 16.4478 87
cluster_6.pdb ( medoid) 13.211 7.41807 26.5113 98
cluster_7.pdb ( medoid) 13.0779 11.7756 30.3179 154
cluster_8.pdb ( medoid) 11.6341 9.79875 25.8328 114
cluster_9.pdb ( medoid) 6.31621 8.86608 29.1358 56
cluster_10.pdb ( medoid) 2.2861 13.1228 29.2609 30
Laboratory of Theory of Biopolymers 2015