Project name: H31E5OK6A02 4uq3

Status: done

submitted: 2017-12-07 04:17:08, status changed: 2017-12-08 03:41:14

Project settings
Peptide sequence VYATLLLLI
Simulation mc cycles200
Peptide secondary structure psipred CEEEEEEEC
Unlikely to bind regions
1:D - 100:D 179:C - 275:C
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 55.2761 1.97192 4.688 109
cluster_2.pdb ( medoid) 53.8604 2.11658 30.703 114
cluster_3.pdb ( medoid) 50.8534 4.64079 48.444 236
cluster_4.pdb ( medoid) 42.647 2.62621 25.4227 112
cluster_5.pdb ( medoid) 26.9553 3.78405 22.5647 102
cluster_6.pdb ( medoid) 16.6156 2.58792 4.09708 43
cluster_7.pdb ( medoid) 11.5737 10.8867 48.0403 126
cluster_8.pdb ( medoid) 11.5284 4.42386 34.4067 51
cluster_9.pdb ( medoid) 6.01412 11.8056 41.2134 71
cluster_10.pdb ( medoid) 1.14278 31.5022 62.3304 36

Laboratory of Theory of Biopolymers 2015