Project name: 1YEJ unbound default HL AEFRHDS ss: CCCCCCC

Status: done

submitted: 2015-02-20 17:44:47, status changed: 2015-03-13 11:03:37

Project settings
Peptide sequence AEFRHDS
Simulation mc cycles50
Peptide secondary structure CCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 24.6781 4.94365 19.9063 122
cluster_2.pdb ( medoid) 18.7554 5.86499 22.0903 110
cluster_3.pdb ( medoid) 16.3698 6.71968 32.522 110
cluster_4.pdb ( medoid) 14.2296 5.8329 14.6573 83
cluster_5.pdb ( medoid) 13.1548 8.28593 19.5239 109
cluster_6.pdb ( medoid) 12.7825 11.5784 27.7716 148
cluster_7.pdb ( medoid) 7.78508 14.2581 41.6034 111
cluster_8.pdb ( medoid) 7.32735 12.9651 34.2307 95
cluster_9.pdb ( medoid) 5.90299 8.8091 27.2853 52
cluster_10.pdb ( medoid) 3.45795 17.3513 42.6171 60
Laboratory of Theory of Biopolymers 2015