Project name: HP1CD

Status: done

submitted: 2017-09-14 05:32:16, status changed: 2017-09-14 06:31:19

Project settings
Peptide sequence QTARKS
Simulation mc cycles50
Peptide secondary structure psipred CCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 44.0002 3.20453 15.763 141
cluster_2.pdb ( medoid) 33.2934 3.96475 10.0689 132
cluster_3.pdb ( medoid) 31.4623 4.73583 24.6286 149
cluster_4.pdb ( medoid) 18.3153 5.45991 22.2236 100
cluster_5.pdb ( medoid) 15.5171 4.7045 12.4678 73
cluster_6.pdb ( medoid) 14.5646 8.1705 25.7122 119
cluster_7.pdb ( medoid) 13.275 3.5405 8.27517 47
cluster_8.pdb ( medoid) 13.1513 6.00702 13.7327 79
cluster_9.pdb ( medoid) 12.8034 6.95127 13.5772 89
cluster_10.pdb ( medoid) 6.76874 10.4894 27.9405 71

Laboratory of Theory of Biopolymers 2015