Project name: 6520bcc1516b042

Status: done

submitted: 2018-07-05 12:42:08, status changed: 2018-07-20 11:05:46

Project settings
Protein sequence(s) GELIGTLNAAKVPAD input pdb
Peptide sequence VEITPNSPRAEA
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 21.6425 8.5018 23.4028 184
cluster_2.pdb ( medoid) 19.9676 7.26175 20.9299 145
cluster_3.pdb ( medoid) 15.9404 6.90073 19.1259 110
cluster_4.pdb ( medoid) 12.4362 10.5337 24.7099 131
cluster_5.pdb ( medoid) 9.27118 10.2468 24.5788 95
cluster_6.pdb ( medoid) 8.2523 9.69427 20.5868 80
cluster_7.pdb ( medoid) 7.88784 12.2974 26.4156 97
cluster_8.pdb ( medoid) 7.25794 10.0579 27.4093 73
cluster_9.pdb ( medoid) 4.68211 11.1061 21.5107 52
cluster_10.pdb ( medoid) 2.62401 12.5762 22.0563 33

Laboratory of Theory of Biopolymers 2015