Project name: 1klu bound default AB GELIGTLNAAKVPAD ss: CEECCCCCCCCCCCC

Status: done

submitted: 2015-02-19 18:28:14, status changed: 2015-03-13 11:03:49

Project settings
Protein sequence(s) EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAGDTRPRFLWQLKFECHFFNGTERVRLLERCIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA input pdb
Peptide sequence GELIGTLNAAKVPAD
Simulation mc cycles50
Peptide secondary structure CEECCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
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model_4 View
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model_7 View
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model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
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Trajectories
replica_1 Download
replica_2 Download
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replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 61.7507 2.08905 6.50966 129
cluster_2.pdb ( medoid) 59.8506 2.08854 6.30388 125
cluster_3.pdb ( medoid) 57.1015 1.8038 9.70662 103
cluster_4.pdb ( medoid) 36.0692 5.04585 16.9906 182
cluster_5.pdb ( medoid) 14.5176 8.33471 19.2641 121
cluster_6.pdb ( medoid) 14.2612 4.83829 28.1527 69
cluster_7.pdb ( medoid) 8.63777 10.8824 39.5129 94
cluster_8.pdb ( medoid) 5.40148 14.8108 46.5667 80
cluster_9.pdb ( medoid) 3.61715 11.6114 31.7146 42
cluster_10.pdb ( medoid) 3.01373 18.2498 42.0144 55
Laboratory of Theory of Biopolymers 2015