Project name: 2fnt bound default 2 runAB RQVNFLG ss: CEECCEC

Status: done

submitted: 2015-02-23 11:18:39, status changed: 2015-03-13 11:04:31

Project settings
Peptide sequence RQVNFLG
Simulation mc cycles50
Peptide secondary structure CEECCEC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 107.83 0.751182 5.11505 81
cluster_2.pdb ( medoid) 72.4496 2.77434 31.4798 201
cluster_3.pdb ( medoid) 26.8524 3.7613 24.2867 101
cluster_4.pdb ( medoid) 25.22 11.816 41.0978 298
cluster_5.pdb ( medoid) 21.7194 1.05896 3.45949 23
cluster_6.pdb ( medoid) 6.17152 10.3702 35.4469 64
cluster_7.pdb ( medoid) 5.95207 12.2646 28.8689 73
cluster_8.pdb ( medoid) 5.05636 14.0417 36.1807 71
cluster_9.pdb ( medoid) 3.11788 19.2438 42.1709 60
cluster_10.pdb ( medoid) 1.98813 14.0836 29.8705 28
Laboratory of Theory of Biopolymers 2015