Project name: 1dkx bound default 3 runA NRLLLTG ss: CCEECCC

Status: done

submitted: 2015-02-23 11:18:58, status changed: 2015-03-13 11:04:59

Project settings
Peptide sequence NRLLLTG
Simulation mc cycles50
Peptide secondary structure CCEECCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 43.0384 3.25291 25.3127 140
cluster_2.pdb ( medoid) 31.019 3.28831 24.0196 102
cluster_3.pdb ( medoid) 27.1231 3.42881 11.6881 93
cluster_4.pdb ( medoid) 24.451 5.72574 38.2148 140
cluster_5.pdb ( medoid) 22.3369 4.0292 12.929 90
cluster_6.pdb ( medoid) 21.5118 5.15997 12.7975 111
cluster_7.pdb ( medoid) 16.57 4.828 25.4221 80
cluster_8.pdb ( medoid) 13.9829 8.00976 38.8928 112
cluster_9.pdb ( medoid) 9.63716 4.77319 14.7793 46
cluster_10.pdb ( medoid) 5.77987 14.8792 47.2922 86
Laboratory of Theory of Biopolymers 2015