Project name: H31E6OK6IEk 1fng

Status: done

submitted: 2017-12-03 09:58:40, status changed: 2017-12-05 13:58:07

Project settings
Protein sequence(s) IKEEHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNNTPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKHWEFEERPWFLEYCKSECHFYNGTQRVRLLVRYFYNLEENLRFDSDVGEFRAVTELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVPRRVEPTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTVEW input pdb
Peptide sequence KVSEFRWYRY
Simulation mc cycles200
Peptide secondary structure psipred CCCCEEEEEC
Flexible regions
Unlikely to bind regions
188:B - 93:B 182:A - 80:A
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 68.8118 4.59224 54.2885 316
cluster_2.pdb ( medoid) 31.7714 3.05306 7.14266 97
cluster_3.pdb ( medoid) 28.7476 3.54813 12.0104 102
cluster_4.pdb ( medoid) 20.9685 2.52761 5.84879 53
cluster_5.pdb ( medoid) 15.9871 4.9415 11.2788 79
cluster_6.pdb ( medoid) 14.0655 5.26111 12.2006 74
cluster_7.pdb ( medoid) 13.5666 8.47673 18.2464 115
cluster_8.pdb ( medoid) 10.0323 3.38906 21.8743 34
cluster_9.pdb ( medoid) 9.12739 2.41033 4.41017 22
cluster_10.pdb ( medoid) 2.77149 7.21634 21.4383 20

 
Laboratory of Theory of Biopolymers 2015