Project name: 2E7A-SESEM

Status: done

submitted: 2018-07-11 02:22:01, status changed: 2018-07-24 22:17:17

Project settings
Peptide sequence SESEM
Simulation mc cycles50
Peptide secondary structure psipred CCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 47.3762 2.74399 19.5554 130
cluster_2.pdb ( medoid) 34.5004 5.07241 27.9222 175
cluster_3.pdb ( medoid) 26.3214 4.02713 22.763 106
cluster_4.pdb ( medoid) 24.4179 6.83925 32.3633 167
cluster_5.pdb ( medoid) 18.7316 6.88677 32.4314 129
cluster_6.pdb ( medoid) 11.1333 7.63473 45.6898 85
cluster_7.pdb ( medoid) 6.36152 9.9033 35.072 63
cluster_8.pdb ( medoid) 4.5535 12.5179 46.1323 57
cluster_9.pdb ( medoid) 3.68206 14.9373 45.8848 55
cluster_10.pdb ( medoid) 1.64698 20.0367 37.3125 33

Laboratory of Theory of Biopolymers 2015