Project name: 2puy bound default 3 runB ARTKQTARKS ss: CCEEEECCCC

Status: done

submitted: 2015-02-23 11:19:18, status changed: 2015-03-13 11:05:05

Project settings
Protein sequence(s) HMIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEEAI input pdb
Peptide sequence ARTKQTARKS
Simulation mc cycles50
Peptide secondary structure CCEEEECCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 48.9447 2.14528 14.2193 105
cluster_2.pdb ( medoid) 23.4595 5.71198 14.2857 134
cluster_3.pdb ( medoid) 22.6954 5.81617 19.9904 132
cluster_4.pdb ( medoid) 18.0229 7.15756 20.0096 129
cluster_5.pdb ( medoid) 17.5783 7.56613 18.1051 133
cluster_6.pdb ( medoid) 16.7161 6.3412 16.367 106
cluster_7.pdb ( medoid) 15.8809 6.17093 12.8867 98
cluster_8.pdb ( medoid) 7.84754 8.28285 19.7831 65
cluster_9.pdb ( medoid) 5.68229 8.09533 17.1415 46
cluster_10.pdb ( medoid) 4.72569 11.0037 28.3886 52
Laboratory of Theory of Biopolymers 2015