Project name: 2bba bound default A NYLFSPNGPIARAW ss: CCCCCCCCCCHHHC

Status: done

submitted: 2015-02-19 18:28:24, status changed: 2015-03-13 11:05:11

Project settings
Peptide sequence NYLFSPNGPIARAW
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCHHHC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
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model_3 View
model_4 View
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model_6 View
model_7 View
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model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 33.8619 3.30755 32.4793 112
cluster_2.pdb ( medoid) 33.4041 3.35288 27.8719 112
cluster_3.pdb ( medoid) 29.2569 3.45217 14.2081 101
cluster_4.pdb ( medoid) 18.3725 6.20494 37.0302 114
cluster_5.pdb ( medoid) 15.4859 10.5903 39.3307 164
cluster_6.pdb ( medoid) 11.5423 9.87668 20.9067 114
cluster_7.pdb ( medoid) 8.08614 7.79111 24.3642 63
cluster_8.pdb ( medoid) 8.0633 10.0455 21.1451 81
cluster_9.pdb ( medoid) 7.49776 10.9366 23.944 82
cluster_10.pdb ( medoid) 5.66746 10.0574 28.3664 57
Laboratory of Theory of Biopolymers 2015