Project name: 5lwm2

Status: done

submitted: 2023-06-02 07:28:18, status changed: 2023-06-02 14:12:20

Project settings
Peptide sequence GVISDAYRL
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 41.9705 2.59706 14.1241 109
cluster_2.pdb ( medoid) 33.192 2.68137 27.1211 89
cluster_3.pdb ( medoid) 30.2797 4.95382 11.5689 150
cluster_4.pdb ( medoid) 28.0903 7.2267 30.7738 203
cluster_5.pdb ( medoid) 16.7278 6.21719 28.1968 104
cluster_6.pdb ( medoid) 16.366 8.98201 47.1657 147
cluster_7.pdb ( medoid) 15.4571 6.98709 20.2524 108
cluster_8.pdb ( medoid) 5.72362 3.14486 12.3705 18
cluster_9.pdb ( medoid) 3.58742 13.1013 29.267 47
cluster_10.pdb ( medoid) 2.50389 9.98446 26.8801 25