Project name: 2LNS_A2

Status: done

submitted: 2018-10-11 13:51:45, status changed: 2018-10-11 22:58:55

Project settings
Peptide sequence PTTIYY
Simulation mc cycles150
Peptide secondary structure CCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 33.3964 2.81468 18.3559 94
cluster_2.pdb ( medoid) 29.3799 5.54802 16.8703 163
cluster_3.pdb ( medoid) 18.897 6.93233 30.7569 131
cluster_4.pdb ( medoid) 18.2775 7.00314 32.1492 128
cluster_5.pdb ( medoid) 17.2974 6.93748 28.2421 120
cluster_6.pdb ( medoid) 17.2971 6.5907 26.42 114
cluster_7.pdb ( medoid) 11.111 8.64005 19.6824 96
cluster_8.pdb ( medoid) 7.33027 7.23029 16.4981 53
cluster_9.pdb ( medoid) 7.28481 8.37358 20.5965 61
cluster_10.pdb ( medoid) 4.04449 9.89 19.2571 40

Laboratory of Theory of Biopolymers 2015