Project name: 2QHN unbound default A ASVSA ss: CCCCC

Status: done

submitted: 2015-02-20 17:44:37, status changed: 2015-03-13 11:05:35

Project settings
Peptide sequence ASVSA
Simulation mc cycles50
Peptide secondary structure CCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 49.7686 2.67237 16.8465 133
cluster_2.pdb ( medoid) 22.7281 6.15977 30.6664 140
cluster_3.pdb ( medoid) 22.6278 10.2529 35.5531 232
cluster_4.pdb ( medoid) 10.2462 8.58857 27.5784 88
cluster_5.pdb ( medoid) 8.94161 11.8547 36.1626 106
cluster_6.pdb ( medoid) 6.96572 14.2125 37.9404 99
cluster_7.pdb ( medoid) 5.25576 10.0842 37.7359 53
cluster_8.pdb ( medoid) 4.53282 13.678 31.4406 62
cluster_9.pdb ( medoid) 3.44445 18 39.2978 62
cluster_10.pdb ( medoid) 1.77886 14.0539 33.808 25
Laboratory of Theory of Biopolymers 2015