Project name: 74c1a571ecbe504

Status: done

submitted: 2018-10-12 02:36:14, status changed: 2018-10-12 07:40:49

Project settings
Peptide sequence LTNLTPELKA
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 32.6615 4.74565 20.7904 155
cluster_2.pdb ( medoid) 23.2321 4.43353 16.9454 103
cluster_3.pdb ( medoid) 19.7206 8.87398 28.6102 175
cluster_4.pdb ( medoid) 19.2337 5.30318 21.351 102
cluster_5.pdb ( medoid) 14.7935 7.9765 39.0682 118
cluster_6.pdb ( medoid) 13.1408 8.14256 31.4619 107
cluster_7.pdb ( medoid) 10.4425 10.6296 28.8936 111
cluster_8.pdb ( medoid) 6.61954 6.04272 24.9301 40
cluster_9.pdb ( medoid) 6.36126 6.75967 14.4432 43
cluster_10.pdb ( medoid) 4.55233 10.1047 30.9484 46

Laboratory of Theory of Biopolymers 2015