Project name: 76be41ba7f8db28

Status: done

submitted: 2018-07-07 07:56:27, status changed: 2018-07-22 00:15:11

Project settings
Protein sequence(s) LELQGLGVDVYDQDVLEQGVLQQVDNAIHEASRASQLVDVEKEYRSVLDDLTSCTTSLRQINKIIEQLS input pdb
Peptide sequence DYVLVE
Simulation mc cycles50
Peptide secondary structure psipred CCEEEC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 40.379 4.33393 15.1545 175
cluster_2.pdb ( medoid) 22.5662 6.6028 33.0399 149
cluster_3.pdb ( medoid) 15.4727 6.26912 14.6668 97
cluster_4.pdb ( medoid) 14.8752 5.04194 11.7409 75
cluster_5.pdb ( medoid) 14.34 4.81172 10.3865 69
cluster_6.pdb ( medoid) 11.4945 6.17685 14.8668 71
cluster_7.pdb ( medoid) 10.9838 7.3745 16.7511 81
cluster_8.pdb ( medoid) 8.04745 16.4027 41.1185 132
cluster_9.pdb ( medoid) 4.67258 10.2727 30.5448 48
cluster_10.pdb ( medoid) 2.169 14.7533 27.7983 32

 
Laboratory of Theory of Biopolymers 2015