Project name: 2c3i bound default B KRRRHPSG ss: CCCCCCCC

Status: done

submitted: 2015-02-19 18:28:24, status changed: 2015-03-13 11:07:19

Project settings
Peptide sequence KRRRHPSG
Simulation mc cycles50
Peptide secondary structure CCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 49.5331 2.30149 10.3163 114
cluster_2.pdb ( medoid) 44.9186 3.82914 33.9872 172
cluster_3.pdb ( medoid) 40.388 4.06061 18.031 164
cluster_4.pdb ( medoid) 22.8496 7.65877 35.8686 175
cluster_5.pdb ( medoid) 20.968 3.86302 9.95836 81
cluster_6.pdb ( medoid) 13.7163 6.99895 23.2188 96
cluster_7.pdb ( medoid) 7.02893 6.40211 13.9676 45
cluster_8.pdb ( medoid) 6.44526 9.15402 24.0822 59
cluster_9.pdb ( medoid) 5.49325 9.83024 32.6142 54
cluster_10.pdb ( medoid) 4.01661 9.95866 18.1369 40
Laboratory of Theory of Biopolymers 2015