Project name: 1klu bound default 2 runAB GELIGTLNAAKVPAD ss: CEECCCCCCCCCCCC

Status: done

submitted: 2015-02-23 11:18:27, status changed: 2015-03-13 11:08:09

Project settings
Protein sequence(s) EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAGDTRPRFLWQLKFECHFFNGTERVRLLERCIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA input pdb
Peptide sequence GELIGTLNAAKVPAD
Simulation mc cycles50
Peptide secondary structure CEECCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
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Representative conformations
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model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
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Trajectories
replica_1 Download
replica_2 Download
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Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 74.5748 1.34094 3.58854 100
cluster_2.pdb ( medoid) 27.8987 2.47323 6.34148 69
cluster_3.pdb ( medoid) 25.517 2.90002 5.09562 74
cluster_4.pdb ( medoid) 23.0999 4.54548 31.9059 105
cluster_5.pdb ( medoid) 20.1479 2.68018 5.13396 54
cluster_6.pdb ( medoid) 20.0557 3.29083 8.10451 66
cluster_7.pdb ( medoid) 15.9267 15.1946 49.5859 242
cluster_8.pdb ( medoid) 14.7663 10.7 35.35 158
cluster_9.pdb ( medoid) 13.987 6.79203 27.9701 95
cluster_10.pdb ( medoid) 10.9693 3.37306 6.43053 37
Laboratory of Theory of Biopolymers 2015