Project name: 2r7g bound default 3 runC PPTLHELYDL ss: CCCHHHHCCC

Status: done

submitted: 2015-02-23 11:19:19, status changed: 2015-03-13 11:08:31

Project settings
Peptide sequence PPTLHELYDL
Simulation mc cycles50
Peptide secondary structure CCCHHHHCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
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replica_3 Download
replica_4 Download
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replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 58.3572 2.69033 8.35355 157
cluster_2.pdb ( medoid) 39.2639 3.89671 11.7499 153
cluster_3.pdb ( medoid) 26.6711 3.89935 17.5088 104
cluster_4.pdb ( medoid) 24.4382 5.89242 14.1792 144
cluster_5.pdb ( medoid) 21.1536 4.0655 8.08587 86
cluster_6.pdb ( medoid) 14.3127 6.9868 14.646 100
cluster_7.pdb ( medoid) 11.8808 4.71349 8.91547 56
cluster_8.pdb ( medoid) 10.675 11.8969 28.6931 127
cluster_9.pdb ( medoid) 7.79823 6.66818 15.8288 52
cluster_10.pdb ( medoid) 2.43783 8.6142 14.5237 21
Laboratory of Theory of Biopolymers 2015