Project name: 1dv8

Status: done

submitted: 2018-01-11 02:25:05, status changed: 2018-01-11 05:26:52

Project settings
Protein sequence(s) CPVNWVEHERSCYWFSRSGKAWADADNYCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQPDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETEL input pdb
Peptide sequence PRPRARS
Simulation mc cycles100
Peptide secondary structure CCCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 45.268 3.04851 12.4114 138
cluster_2.pdb ( medoid) 44.9231 4.51883 10.9712 203
cluster_3.pdb ( medoid) 44.3686 2.56938 7.97021 114
cluster_4.pdb ( medoid) 29.0568 2.75323 11.2272 80
cluster_5.pdb ( medoid) 25.6942 5.8768 25.1403 151
cluster_6.pdb ( medoid) 16.4377 5.41439 10.8536 89
cluster_7.pdb ( medoid) 10.0085 4.99575 12.2539 50
cluster_8.pdb ( medoid) 9.76885 5.73251 11.5156 56
cluster_9.pdb ( medoid) 8.40017 7.6189 20.1464 64
cluster_10.pdb ( medoid) 6.22149 8.84033 22.4475 55

 
Laboratory of Theory of Biopolymers 2015