Project name: 1jd5 bound default A AIAYFIPD ss: CEEEECCC

Status: done

submitted: 2015-02-19 18:28:14, status changed: 2015-03-13 11:08:56

Project settings
Peptide sequence AIAYFIPD
Simulation mc cycles50
Peptide secondary structure CEEEECCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
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model_4 Download
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model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 43.2067 2.56905 6.91365 111
cluster_2.pdb ( medoid) 33.3396 3.59932 13.5321 120
cluster_3.pdb ( medoid) 31.8036 2.60977 8.74355 83
cluster_4.pdb ( medoid) 27.4801 5.82239 14.5431 160
cluster_5.pdb ( medoid) 24.129 4.22728 14.0749 102
cluster_6.pdb ( medoid) 18.8231 6.21575 14.0736 117
cluster_7.pdb ( medoid) 11.8442 7.85194 26.1658 93
cluster_8.pdb ( medoid) 11.8102 8.12854 21.747 96
cluster_9.pdb ( medoid) 11.4864 8.53184 21.183 98
cluster_10.pdb ( medoid) 1.83839 10.8791 20.9723 20
Laboratory of Theory of Biopolymers 2015